Professor Stuart Wilson
School of Biosciences
Roper Chair in Genetics
- Profile
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- 2019- present: Roper Chair in Genetics
- 2008 - 2019: Professor, School of Biosciences, University of Sheffield
- 2008: Reader, Dept of Molecular Biology and Biotechnology, University of Sheffield
- 2003 - 2007: Senior Lecturer, Dept of Molecular Biology and Biotechnology, University of Sheffield
- 1999 - 2003: Lecturer Dept. of Biomolecular Sciences, UMIST
- 1996 - 1999: Weir Junior Research Fellow, University College Oxford
- 1995 - 1999: Wellcome Trust Career Development Fellow, Biochemistry Dept, Oxford University
- 1991 - 1995: Post-doctoral fellow, Biochemistry Department, University College London
- 1987 - 1991: PhD student, Biochemistry Department, University College London
- 1984 - 1987: Degree in Cell and Molecular Biology, Biophysics Department, King's College London
- Research interests
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My laboratory studies human gene expression and how defects in this process lead to various diseases including motor neuron disease and neurodevelopmental disorders. The group have a long-standing interest in how RNA binding proteins regulate gene expression with a particular interest in how mRNA is processed in the nucleus and subsequently transported to the cytoplasm. We use a wide range of technologies to study these processes including CRISPR engineering of human cells including stem cells, proteomics and next generation DNA sequencing methods to globally analyse gene expression at multiple levels including chromatin organisation, transcription and RNA processing. We also work closely with industrial partners to develop improved expression systems for biopharmaceuticals and most recently we have been developing strategies for improved therapeutic mRNAs. We are also working on a project to develop gene therapy approaches for the treatment of neurodevelopmental disorders such as hnRNPU syndrome. I am also the Director and Founder of the Sheffield Institute for Nucleic Acids (SInFoNiA) (https://sites.google.com/sheffield.ac.uk/sinfonia/home) which is the home for nucleic acids focussed research at the University of Sheffield.
- Publications
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Show: Featured publications All publications
Featured publications
Journal articles
- Co-transcriptional Loading of RNA Export Factors Shapes the Human Transcriptome. Molecular Cell. View this article in WRRO
- TREX exposes the RNA-binding domain of Nxf1 to enable mRNA export.. Nat Commun, 3, 1006. View this article in WRRO
- A Burkholderia pseudomallei toxin inhibits helicase activity of translation factor eIF4A.. Science, 334(6057), 821-824. View this article in WRRO
- Arginine methylation of REF/ALY promotes efficient handover of mRNA to TAP/NXF1.. Nucleic Acids Res, 38(10), 3351-3361. View this article in WRRO
- ATP is required for interactions between UAP56 and two conserved mRNA export proteins, Aly and CIP29, to assemble the TREX complex. Genes and Development, 24(18), 2043-2053.
- UIF, a New mRNA export adaptor that works together with REF/ALY, requires FACT for recruitment to mRNA.. Curr Biol, 19(22), 1918-1924.
- Mutually exclusive interactions drive handover of mRNA from export adaptors to TAP.. Proc Natl Acad Sci U S A, 105(13), 5154-5159.
All publications
Journal articles
- Herpes simplex virus
ICP27 protein provides viralmRNAs with access to the cellularmRNA export pathway. The EMBO Journal, 42(14). - The tudor SND1 protein is an m6A RNA reader essential for replication of Kaposi’s sarcoma-associated herpesvirus. eLife, 8. View this article in WRRO
- Co-transcriptional Loading of RNA Export Factors Shapes the Human Transcriptome. Molecular Cell. View this article in WRRO
- The m6A‑methylase complex and mRNA export. Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. View this article in WRRO
- The m6A-methylase complex recruits TREX and regulates mRNA export. Scientific Reports, 8(1). View this article in WRRO
- The role of TREX in gene expression and disease.. The Biochemical journal, 473(19), 2911-2935. View this article in WRRO
- 227 Luzp4 defines a new mRNA export pathway in cancer cells. European Urology Supplements, 14(2), e227-e227b.
- 527 N6-methyladenosine mRNA methylation in common human cancers: Identifying a potential role in androgen-resistance within prostate cancer. European Urology Supplements, 14(2), e527-e527a.
- Arginine methylation and citrullination of splicing factor proline- and glutamine-rich (SFPQ/PSF) regulates its association with mRNA. RNA, 21(3), 347-359. View this article in WRRO
- Luzp4 defines a new mRNA export pathway in cancer cells. Nucleic Acids Research, 43(4), 2353-2366. View this article in WRRO
- In C andida albicans hyphae, Sec2p is physically associated with SEC2 mRNA on secretory vesicles. Molecular Microbiology, 94(4), 828-842. View this article in WRRO
- Sequestration of multiple RNA recognition motif-containing proteins by C9orf72 repeat expansions.. Brain, 137(Pt 7), 2040-2051. View this article in WRRO
- GGGGCC Repeat Expansion of C9ORF72 Is Toxic Via Sequestration Of RNA Binding Proteins And Consequent Disruption Of RNA Splicing (S56.004). Neurology, 82(10_supplement).
- GGGGCC Repeat Expansion of C9ORF72 Is Toxic Via Sequestration Of RNA Binding Proteins And Consequent Disruption Of RNA Splicing (1II-2.005). Neurology, 82(10_supplement).
- Competitive and cooperative interactions mediate RNA transfer from herpesvirus saimiri ORF57 to the mammalian export adaptor ALYREF.. PLoS Pathog, 10(2), e1003907. View this article in WRRO
- Chtop is a component of the dynamic TREX mRNA export complex.. EMBO J, 32(3), 473-486.
- Mapping interactions between mRNA export factors in living cells.. PLoS One, 8(6), e67676. View this article in WRRO
- Erratum: TREX exposes the RNA-binding domain of Nxf1 to enable mRNA export. Nature Communications, 4(1).
- TREX exposes the RNA-binding domain of Nxf1 to enable mRNA export.. Nat Commun, 3, 1006. View this article in WRRO
- BLF1, the first Burkholderia pseudomallei toxin, connects inhibition of host protein synthesis with melioidosis.. Biochem Soc Trans, 40(4), 842-845.
- Drosha regulates neurogenesis by controlling neurogenin 2 expression independent of microRNAs.. Nat Neurosci, 15(7), 962-969.
- The structure and selectivity of the SR protein SRSF2 RRM domain with RNA.. Nucleic Acids Res, 40(7), 3232-3244. View this article in WRRO
- A Burkholderia pseudomallei toxin inhibits helicase activity of translation factor eIF4A.. Science, 334(6057), 821-824. View this article in WRRO
- An interaction between KSHV ORF57 and UIF provides mRNA-adaptor redundancy in herpesvirus intronless mRNA export.. PLoS Pathog, 7(7), e1002138. View this article in WRRO
- FatJ acts via the Hippo mediator Yap1 to restrict the size of neural progenitor cell pools.. Development, 138(10), 1893-1902.
- Structural basis for the recognition of cellular mRNA export factor REF by herpes viral proteins HSV-1 ICP27 and HVS ORF57.. PLoS Pathog, 7(1), e1001244. View this article in WRRO
- The 1H, 13C and 15N backbone and side-chain assignment of the RRM domain of SC35, a regulator of pre-mRNA splicing.. Biomol NMR Assign, 5(1), 7-10.
- Arginine methylation of REF/ALY promotes efficient handover of mRNA to TAP/NXF1.. Nucleic Acids Res, 38(10), 3351-3361. View this article in WRRO
- Structure and function of mRNA export adaptors.. Biochem Soc Trans, 38(Pt 1), 232-236.
- The 1H, 13C and 15N backbone and side-chain assignment of the RRM domain of SC35, a regulator of pre-mRNA splicing. Biomolecular NMR Assignments, 1-4.
- ATP is required for interactions between UAP56 and two conserved mRNA export proteins, Aly and CIP29, to assemble the TREX complex. Genes and Development, 24(18), 2043-2053.
- A direct comparison of strategies for combinatorial RNA interference. BMC MOL BIOL, 11. View this article in WRRO
- Analysis of arginine and lysine methylation utilizing peptide separations at neutral pH and electron transfer dissociation mass spectrometry.. J Am Soc Mass Spectrom, 21(1), 88-96.
- Cyclic Nrarp mRNA Expression Is Regulated by the Somitic Oscillator but Nrarp Protein Levels Do Not Oscillate. DEV DYNAM, 238(12), 3043-3055.
- UIF, a New mRNA export adaptor that works together with REF/ALY, requires FACT for recruitment to mRNA.. Curr Biol, 19(22), 1918-1924.
- The integrity of a lamin-B1-dependent nucleoskeleton is a fundamental determinant of RNA synthesis in human cells. J CELL SCI, 121(7), 1014-1024.
- Mutually exclusive interactions drive handover of mRNA from export adaptors to TAP.. Proc Natl Acad Sci U S A, 105(13), 5154-5159.
- Robo2-Slit1 dependent cell-cell interactions mediate assembly of the trigeminal ganglion. NAT NEUROSCI, 11(3), 269-276.
- Structural and functional analysis of RNA and TAP binding to SF2/ASF.. EMBO Rep, 8(8), 756-762.
- Assignment of 1H, 13C, and 15N resonances for SF2 RNA recognition motif 2.. J Biomol NMR, 38(2), 193.
- The expression of Fat-1 cadherin during chick limb development. INT J DEV BIOL, 51(2), 173-176.
- Regional morphogenesis in the hypothalamus: a BMP-Tbx2 pathway coordinates fate and proliferation through Shh downregulation.. Dev Cell, 11(6), 873-885.
- Molecular basis of RNA recognition and TAP binding by the SR proteins SRp20 and 9G8.. EMBO J, 25(21), 5126-5137.
- The solution structure of REF2-I reveals interdomain interactions and regions involved in binding mRNA export factors and RNA.. RNA, 12(11), 1933-1948.
- A robust system for RNA interference in the chicken using a modified microRNA operon.. Dev Biol, 294(2), 554-563.
- Assignment of 1H, 13C, and 15N resonances for the REF2-I mRNA export factor.. J Biomol NMR, 36 Suppl 1, 41.
- The prototype gamma-2 herpesvirus nucleocytoplasmic shuttling protein, ORF 57, transports viral RNA through the cellular mRNA export pathway.. Biochem J, 387(Pt 2), 295-308.
- Erratum: Sequence and comparative analysis of the chicken genome provide unique perspective on vertebrate evolution (Nature (2004) 432 (695-716)). Nature, 433(7027), 777.
- Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags. GENOME RES, 15(1), 174-183.
- Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. NATURE, 432(7018), 695-716.
- A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. NATURE, 432(7018), 717-722.
- A simple method for improving protein solubility and long-term stability.. J Am Chem Soc, 126(29), 8933-8939.
- The chicken as a model for large-scale analysis of vertebrate gene function. NAT REV GENET, 4(2), 87-98.
- A comprehensive collection of chicken cDNAs.. Curr Biol, 12(22), 1965-1969.
- Epithelial membrane proteins induce membrane blebbing and interact with the P2X7 receptor C terminus.. J Biol Chem, 277(37), 34017-34023.
- Herpes simplex virus ICP27 protein provides viral mRNAs with access to the cellular mRNA export pathway. EMBO J, 20(20), 5769-5778.
- Characterization of the equine infectious anaemia virus S2 protein.. J Gen Virol, 81(Pt 9), 2189-2194.
- Structural adaptation to selective pressure for altered ligand specificity in the Pseudomonas aeruginosa amide receptor, amiC.. Protein Eng, 13(2), 129-132.
- Cloning and characterization of hIF2, a human homologue of bacterial translation initiation factor 2, and its interaction with HIV-1 matrix. Biochemical Journal, 342(1), 97-103.
- Cloning and characterization of hIF2, a human homologue of bacterial translation initiation factor 2, and its interaction with HIV-1 matrix.. Biochem J, 342 ( Pt 1), 97-103.
- TRIP: a novel double stranded RNA binding protein which interacts with the leucine rich repeat of flightless I.. Nucleic Acids Res, 26(15), 3460-3467.
- Oligomerization of the amide sensor protein AmiC by X-ray and neutron scattering and molecular modeling. Biochemistry, 36(26), 8020-8029.
- Structural determinants within the subunit protein of Ty1 virus‐like particles. Molecular Microbiology, 22(4), 667-679.
- Transcription antitermination regulation of the Pseudomonas aeruginosa amidase operon. EMBO Journal, 15(21), 5907-5916.
- IDENTIFICATION OF 2 NEW GENES IN THE PSEUDOMONAS-AERUGINOSA AMIDASE OPERON, ENCODING AN ATPASE (AMIB) AND A PUTATIVE INTEGRAL MEMBRANE-PROTEIN (AMIS). J BIOL CHEM, 270(32), 18818-18824.
- Transcriptional analysis of the amidase operon from Pseudomonas aeruginosa.. Journal of bacteriology, 177(11), 3052-3057.
- Crystal structure of AmiC: the controller of transcription antitermination in the amidase operon of Pseudomonas aeruginosa.. The EMBO Journal, 13(24), 5810-5817.
- Crystallisation, Preliminary X-Ray Analysis and Secondary Structure Detennination of Formamidase from Methyloplzilus methylotrophus. Protein & Peptide Letters, 1(3), 202-205.
- Antitermination of amidase expression in Pseudomonas aeruginosa is controlled by a novel cytoplasmic amide-binding protein.. The EMBO Journal, 12(9), 3637-3642.
- Crystallization of and preliminary X-ray data for the negative regulator (AmiC) of the amidase operon of Pseudomonas aeruginosa. Journal of Molecular Biology, 222(4), 869-871.
- Cloning and DNA sequence of amiC, a new gene regulating expression of the Pseudomonas aeruginosa aliphatic amidase, and purification of the amiC product.. Journal of Bacteriology, 173(16), 4914-4921.
- An anciently diverged family of RNA binding proteins maintain correct splicing of a class of ultra-long exons through cryptic splice site repression. eLife, 12.
- An anciently diverged family of RNA binding proteins maintain correct splicing of a class of ultra-long exons through cryptic splice site repression. eLife, 12.
- N6-methyladenosine modification is not a general trait of viral RNA genomes. Nature Communications, 15(1).
- m6A Regulates the Stability of Cellular Transcripts Required for Efficient KSHV Lytic Replication. Viruses, 15(6), 1381-1381.
Chapters
- RNA Interference in Chicken Embryos In Nakamura H (Ed.), Electroporation and Sonoporation in Developmental Biology (pp. 295-314). Springer Verlag
- RNAi in chicken embryos In Doran DT & Helliwell C (Ed.), RNA interference: methods for plants and animals (pp. 183-204). CABI Publishing
Conference proceedings papers
- 13-P051 A temporal integration of BMP signalling controls progressive progenitor specification in the ventral diencephalon. Mechanisms of Development, Vol. 126 (pp S210-S210)
Preprints
- Widespread 3’ UTR splicing regulates expression of oncogene transcripts in sequence-dependent and independent manners, Cold Spring Harbor Laboratory.
- N6-methyladenosine modification is not a general trait of viral RNA genomes, Cold Spring Harbor Laboratory.
- An anciently diverged family of RNA binding proteins maintain correct splicing of ultra-long exons through cryptic splice site repression, Cold Spring Harbor Laboratory.
- m6A regulates the stability of cellular transcripts required for efficient KSHV lytic replication, Cold Spring Harbor Laboratory.
- Research group
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Graduate students
- Joshua Zilate (2020-2024) BBSRC CASE student with Astrazeneca – development of improved biopharmaceutical expression systems for CHO cells.
email: jzilate1@sheffield.ac.uk
- Mikayla Fernholz (2021-2025) BBSRC CASE student with Astrazeneca – development of improved biopharmaceutical expression systems for CHO cells.
email: mfernholz1@sheffield.ac.uk
- Ashleigh Whelan (2022-2026) BBSRC – Analysis of the role of RNA binding proteins in the DNA damage response.
email: agwhelan1@sheffield.ac.uk
Research staff
- Dr Ang Li (2022-2025) BBSRC project on the role of RNA binding proteins in genome architecture and gene expression.
email: ali15@sheffield.ac.uk
- Dr Chiara Galloni (2021-2025) MRC project on synthetic mRNA untranslated regions.
email: c.galloni@sheffield.ac.uk
- Dr Charlotte Vandermeulen (2021-2025) MRC project on synthetic mRNA untranslated regions.
email: c.vandermeulen@sheffield.ac.uk
- Dr Daniel Williams (2023-2024) Lifearc project on the development of gene therapy approaches for the treatment of hnRNPU syndrome.
email: Daniel.willaims@sheffield.ac.uk
- Dr AN Other – new BBSRC funded post to be advertised shortly….
Laboratory Manager
- Vicky Porteous-Medley
email: v.porteous@sheffield.ac.uk
- Teaching activities
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- MBB325 The world of RNA (Module Coordinator)
- MBB363 Genetics data handling
- MBB361 Third year literature reviews
- MBB380 Third year research projects
- MBB402 Advanced literature review
- MBB403/404 Advanced research projects